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Computational Biology: Genomes, Networks, Evolution >> Content Detail



Recitations



Recitations

The recitation sessions were conducted for the purpose of providing students with the tools needed to complete the course. The notes provided below are not intended to be complete or authoritative. Recitation notes are courtesy of Pouya Kheradpour, course TA. Used with permission.


SES #Topics
R1Running Times, Molecular Biology and Probability (PDF)
R2Python and Dynamic Programming and Alignments (PDF)
R3Randomization, Modulus, Hashing, Random Projections, BLAST, Suffix Trees (PDF)
R4Hidden Markov Models (PDF)
R5Motif Finding Using EM and Gibbs Sampling (PDF)
R6UPGMA, Neighbor Joining, Parsimony (PDF)
R7RNA Folding, Context Free Grammars and Related Algorithms (PDF)
R8Sequencing by Hybridization (PDF)

 








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