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Computational Functional Genomics >> Content Detail



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Calendar

Lec #TOPICSLECTURERKEY DATES
Part 1: Using DNA Sequence to Explain Mechanism
1Course IntroductionDavid Gifford
2Pairwise AlignmentDavid Gifford
3Finding Regulatory Sequences in DNA: Motif DiscoveryTommi Jaakkola
4Finding Regulatory Sequences in DNA: Motif Discovery (cont.)Tommi JaakkolaProblem set 1 due
Part 2: Observing the Mechanism of Transcriptional Regulation
5Microarray TechnologyDavid Gifford
6Expression Arrays, Normalization, and Error ModelsTommi Jaakkola
7Expression Profiles, Clustering, and Latent ProcessesTommi JaakkolaProblem set 2 due
8Computational Functional GenomicsDavid Gifford
9Stem Cells and Transcriptional RegulationDavid Gifford
10Part One: An Example of Clustering Expression Data

Part Two: Computational Functional Genomics (cont.)
David GiffordProblem set 3 due
11Project Group Meetings
12Project Group Initial PresentationsStudents
13Computational Discovery of Regulatory NetworksGeorg Gerber (Guest Lecturer)
14RNA SilencingDavid Bartel (Guest Lecturer)
Part 3: Building Predictive Network Models of Transcriptional Regulation
15Computational Functional Genomics (cont.)David Gifford
16Human Regulatory NetworksDavid Gifford
17Protein NetworksDavid Gifford
18Causal ModelsTommi Jaakkola
19Causal Bayesian Networks, Active LearningTommi Jaakkola
20From Biological Data to Biological InsightNir Friedman (Guest Lecturer)
21Modeling Transcriptional RegulationTommi Jaakkola
22DynamicsDavid GiffordProblem set 4 due

 








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