Courses:

Foundations of Computational and Systems Biology >> Content Detail



Assignments



Assignments

MATLAB® software is required to run the .m files in this section. RasMol software is required to run the .pdb files found in this section.  Any number of biological sequence comparison software tools can be used to import the FASTA formatted sequence (.fa) files in this section. Use the Python Interpreter to run the .py files found in this section.

ASSIGNMENTSSUPPORTING FILES
Homework 1 (PDF)prob2seqs.fa (FA)
prob3inputseqs.fa (FA)
prob4seq.txt (TXT)
Sample run for problem 6 (TXT)
Homework 2 (PDF)dino1.fa (FA)
dino2.fa (FA)
pombe.fa (FA)
motifs.txt (TXT)
random.fa (FA)
5primesplicesites.txt (TXT)
3primesplicesites.txt (TXT)
splicing.run (TXT)
motif.run (TXT)
Homework 3 (PDF)1fxd.pdb (PDB)
rmsd.py (PY)
Homework 4 (PDF)hw4.m (M)
repressilator.m (M)

Repressilator model based on: Elowitz M. B., and S. Leibler "A synthetic oscillatory network of transcriptional regulators." Nature 403, no. 6767 (20 Jan 2000): 335-8.


 








© 2010-2021 OpenCollege.com, All Rights Reserved.
Open College is a service mark of AmeriCareers LLC.