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Computing for Biomedical Scientists >> Content Detail



Lecture Notes



Lecture Notes

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Part 1: Introduction to Computing


LEC #TOPICS
1Course Overview (PDF)
2Algorithms and Object Oriented Programming (PDF)
3Java® Constructs (PDF)
4Built-in Operators, Built-in Java® Classes, and Classes, Objects & Methods (PDF)
5Recursion and Iteration, Imperative & Declarative Programming, Abstract Data Types (ADTs), Arrays, and Classes, Object & Methods (continued) (PDF)
6Designing Methods, Wrapper Classes, Arrays, Packages, Inheritance, Derived Classes, and Dynamic Binding (PDF)
7Information Hiding, Exceptions (PDF)
8Vectors, Streams, Input and Output (PDF)
Lecture 8 Code (ZIP) (zip file includes: TestRotation2.java, TestVector2.java, RotateText.java, KeyboardInput.java, TestSimpleParser.java, TestRotation.java, TestVector.java, and Medinfo.txt)
9Searching and Sorting (PDF)
Lecture 9 Code (ZIP) (zip file includes: TestBinarySearch.java, TestMergeSort.java, and TestSelectionSort.java)
10Time Complexity of Algorithms (PDF)
11Review Session (PDF)
Review Session Solutions (PDF)


Part 2: Data and Knowledge Representation


LEC #TOPICS
12Logic and Medical Ontology (PDF)
13Boolean Algebra and Predicate Knowledge (PDF)
14Ontology and Data Model (PDF)
15Medical Vocabulary Representation and Survey of Medical Coding Systems (PDF)
16Medical Coding Systems (continued) and UMLS (PDF)
17Major KR Schemes (PDF)
18Process (PDF)


Part 3: Data Management, Querying and Retrieval


LEC #TOPICS
19Nature of Data
20Data Models
21Maintaining Integrity of Data
22Implementing a Relational Database
23Overview of Object Oriented Data Management
24Modeling for Analytical Processing of Data
25No Lecture, Final Project Due




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